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How Does Lily Breeding Work? Here’s What It Takes to Create New Varieties

Modern breeding combines traditional cross-pollination with advanced techniques like in vitro fertilization, embryo rescue, and molecular markers to overcome genetic barriers between species. Plus, a lot more!

By: THURSD. | 23-03-2026 | 12 min read
How It Works Floral Education Cut Flowers
What Is the Process of Lily Breeding?

Have you ever thought what the breeding of lilies is all about? There is quite a lot involved. Lily breeding is, essentially, a sophisticated horticultural and scientific process of creating new Lilium cultivars with desirable ornamental, adaptive, and commercial traits, like improved colors, fragrance, disease resistance (including Fusarium), and strong, erect stems.

Modern breeding combines traditional cross-pollination with advanced techniques like in vitro fertilization, embryo rescue, and molecular markers to overcome genetic barriers between species. But more than that, the processes take years of patient science, creativity, and passion.

What Lily Breeding Really Means in Brief

The genus Lilium contains several wild species distributed across the temperate regions of the Northern Hemisphere, from Eastern Asia and Europe to North America. From this rich pool, breeders have developed approximately 10,000 registered cultivars, with more than 300 new ones added every year.

 

Lily breeding involves the deliberate crossing of two parent plants chosen from this pool to produce offspring that carry the best traits of both.
The lily varieties available today are a product of years of careful crossing and selection. Photo by @dejongleliesholland

 

Lily breeding involves the deliberate crossing of two parent plants chosen from this pool to produce offspring that carry the best traits of both. Breeders select a pollen donor (the male parent) and a seed parent (the female), then transfer pollen from one to the stigma of the other.  If the cross is successful, a seed capsule forms, and inside it are embryos that represent an entirely new genetic combination. Each seedling is, in a meaningful sense, a unique individual, one that has never existed before.

Most commercially available lilies fall into four categories, which are Asiatic (AZ), Oriental (OR), Longiflorum (LF), and Trumpet (TR or TP). Within each group, hybridization results in plants that are usually fertile and vigorous. It is when breeders try to cross between these groups, creating so-called intersectional hybrids like Longiflorum x Asiatic (LA), Oriental x Trumpet, also called 'Orienpets' (OT), or even Longiflorum x Oriental x Trumpet (LOT), that things get a bit complicated, yet exciting. The varieties available today are a product of years of careful crossing and selection from these species.

 

How Does Lily Breeding Work?
The OT Lily Dalian by @qualily_unfoldingbeauty

 

What Lily Breeding Tries to Achieve

The goals of a modern lily breeding program are a lot more than esthetics. Before pollen is brushed onto a stigma, breeders decide what they are aiming for, which includes:

Growers and markets seek lily flowers that last longer in the vase, stems that are straight and strong enough to survive international shipping, and plants that resist fungal diseases and viruses that can devastate a greenhouse crop. Pollen-free varieties have also become increasingly desirable because loose lily pollen stains clothing and furniture, a drawback that discourages some consumers from buying.

 

What Is the Process of Lily Breeding?
Photo by @qualily_unfoldingbeauty

 

Fragrance is another active area of interest. Oriental lilies are famous for their scent, but that same intensity can be polarizing. Breeders have worked to develop varieties with a lighter fragrance that fills a room gently and does not overwhelm the space. The Roselily series was specifically bred with this in mind. It has a pleasant scent, not the heavier perfume typical of many Orientals.

Shape and form are also interesting qualities. At the Dutch Lily Days event, growers and breeders gather annually to showcase what is coming next. And at a recent edition, Kees van Paridon of Dutch Lily Masters predicted continued growth in double-flowered varieties, while Levi Evers of Bredefleur noted that the industry would see more variation in flower shapes and a wider range of pollen-free options. The Lily Butterfly series, showcased by Zabo Plant, also offered unique (parrot-like/form) varieties showing a new direction for lily aesthetics.

 

How Does Lily Breeding Work?
Bredefleur's OR Lily Zambesi. Photo by @bredefleur

 

Still on the same, De Looff Lily Innovation focuses strongly on double-flowered lines that are sold through the Roselily grower association, giving florists pollen-free flowers with rich, layered petals. Other brands show how specific breeding goals create recognizable product lines for cut, garden, and pot lilies.

The Basics, From Lilies to Pollination, and Seeds

As already noted, lilies belong to the genus Lilium, a group of bulbous perennials grown on a very large scale, especially in the Netherlands, which accounts for more than three-quarters of the global cultivated area. In nature, lilies reproduce both sexually through seed and vegetatively through bulb scales, daughter bulbs, and other bulb structures.

Breeding focuses on sexual reproduction, using pollen from one parent and the female parts of another to create seeds that mix traits from both. A lily flower has anthers, which produce pollen, a stigma at the tip of the pistil, which receives the pollen, and a style and ovary, where pollen tubes grow, and fertilization occurs, all of which play key breeding roles.

 

How Does Lily Breeding Work?
Roselily Aisha bulb. Photo by @zaboplant

 

When a pollen grain from one lily lands on the stigma of another compatible lily, it can grow a pollen tube down into the ovary and fertilize the ovules, which later form seeds. Each seed can grow into a genetically unique plant, so a single pollination may yield many different seedlings for breeders to evaluate.

How Breeders Make Crosses

In controlled lily breeding, people take over the job that wind or insects might do in nature. The steps are fairly similar whether you are a commercial breeder like Vletter & Den Haan, Mak Breeding, World Breeding, or De Jong Lilies, or a small-scale hybridizer working by yourself.

 

How Does Lily Breeding Work?
Photo by @royalvanzanten_flowerbulbs

 

 

What Is the Process of Lily Breeding?
Bulbs of the OT Lily Brusago. Photo by @vletterdenhaan

 

In many common combinations, such as crosses within Asiatic or Oriental groups, this entire process works reasonably well using standard cross-pollination.

From Seed to Seedling to Selection

Once seeds are harvested, the slow part of breeding begins. Lily seeds are sown and grown into juvenile plants, which may take several years before producing their first flowers. In commercial lily breeding programs, thousands of seedlings are raised, each with a code.​

During the first flowering years, breeders look closely at qualities like flower shape, color, and any special traits like double petals or lack of pollen, stem length and strength, bud count, and flower orientation, leaf health, disease symptoms, and overall vigor, as well as bulb formation, since lilies are traded and planted as bulbs.

 

What Is the Process of Lily Breeding?
Photo by @dejongleliesholland

 

Most seedlings never make it past these first selection rounds. Only a small fraction move on to further trials, where they have to show they can perform in the greenhouse, in the field, in cold storage, and in transport. Breeders like Royal Van Zanten and De Looff Lily Innovation, among others, work closely with growers and exporters so that promising selections are tested in real production settings, ensuring that a beautiful new lily is also practical to grow, harvest, store, and ship.

When Nature Says "NO", How Do They Overcome the Barriers?

Things often become more demanding when breeders try to combine very different lily groups, such as Lilium longiflorum with Asiatic hybrids or crosses between distant sections like Archelirion (Orientals) and other species. These combinations are valuable because they can bring together strong stems, fragrance, disease tolerance, and new color patterns, but lilies often have natural barriers that block such crosses.

 

How Does Lily Breeding Work?
Photo by @bredefleur

 

Scientists and breeders describe two main kinds of barriers in these cases. Pre-fertilization barriers are where pollen tubes stop growing partway down the style or never reach the ovules. Post-fertilization barriers, on the other hand, occur where the fertilized embryo starts to develop but then fails inside the seed. To handle this, researchers have developed special approaches:

Such methods ensure the breeder creates interspecific and inter-sectional hybrids that seldom appear naturally, including many of the modern Oriental, Longiflorum, Asiatic, and OT hybrid lines that dominate commercial production.

 

What Is the Process of Lily Breeding?
Lily testing by @vws_flowerbulbs

 

Modern Tools, Like Polyploidy and Genetic Insights

Aside from traditional cross-pollination, lily breeders have more sophisticated tools in their toolkit. One important area is polyploid breeding, where plants are induced to have more than two sets of chromosomes. Polyploid lilies can show thicker petals and leaves, larger flowers, and more robust growth, and changes in fertility that can be used strategically in breeding.

Mitotic and meiotic polyploidization techniques allow breeders to combine different genomes and stabilize new hybrids, widening the range of possible crosses and helping overcome some incompatibilities.​

Genetic and genomic research is also giving breeders more insight into traits like disease resistance, flower color pathways, and vernalization needs. While lilies do not yet have the same level of genetic tools as some major crops, knowledge from research helps set targets and design more efficient crossing strategies.

 

How Does Lily Breeding Work?
Roseliilies by @vws_flowerbulbs

 

Selection, Market Launch, and the Role of Growers and Brand Partners

Once a candidate has proven itself through several trial stages, the journey to commercial release begins. This includes:

 

How Does Lily Breeding Work?
Hunting for newly introduced lily varieties at Qualily. Photo by @qualily_unfoldingbeauty

 

In the Netherlands, this chain is unusually well developed. Companies like Lily Company, based in Andijk, breed and export more than 150 garden lily varieties grown in some of the most sustainably managed greenhouses in the world. Lilies of Life, a Rijnsburg-based family business established in 1931, specializes exclusively in lilies and produces lilies with strong Fairtrade ideals.

Cut lily flower growers like Bredefleur, run by fourth-generation lily grower brothers, and known for high-quality stems in Asiatic, Oriental, Longiflorum, and LA hybrid groups, also collaborate with leading breeders, like Vletter en Den Haan, World Breeding, Royal Van Zanten, and MAK Breeding, growing novel breeding innovations (lilies) for the market.

Klaver Flowers also grows lilies in their greenhouse (considered the largest contiguous specific for Lilium growing in the country, spanning 14 hectares) in Heerhugowaard, from where one can choose from their more than 30 varieties, available year-round. They specialize in single- and double-flowered Orientals, available in premium and basic lines.

 

How Does Lily Breeding Work?
Klaver Flowers team scouting for varieties during the Dutch Lily Days. Photo by @klaverflowers

 

Raymond Vijverberg’s Qualily also works with breeders, like Vletter and de Haan, and MAK Breeding to grow Asiatic, Oriental, Longiflorum, and OT hybrid lilies across several greenhouse locations year-round. Connecting Lilies, with nurseries in the Netherlands and Spain, likewise, supplies European supermarket and retail channels with lilies from Longiflorum, Asiatic, Oriental, and OT categories, adapting fast to seasonal demand across markets.

Zabo Plant, which operates a joint venture called Valdivia Lilies in Chile, has also been instrumental in bringing branded lily concepts to market. Their work with the Roselily and Lily Looks brands helped establish the idea that a lily variety could be marketed as a premium, named product. Zabo’s partnership with De Looff Lily Innovation and World Breeding is also behind an exciting line of double OT Roselily varieties being introduced to growers.

 

How Does Lily Breeding Work?
At the Dutch Lily Days. Photo by @qualily_unfoldingbeauty

 

More Promising News for Lily Breeding

With roughly 100 wild species available as genetic raw material, and molecular tools like genomic in situ hybridization (GISH) allowing breeders to track exactly which chromosomes have been inherited from which parent, the possibilities in lily breeding are yet to be fully explored.

Researchers have recently sequenced the lily genome for the first time, which is a significant achievement given that Lilium sargentiae has one of the largest plant genomes ever recorded at 35.66 gigabases.

 

How Does Lily Breeding Work?
Photo by @royalvanzanten_flowerbulbs

 

That sequence is already presenting new avenues for understanding how traits are inherited, and disease resistance can be introduced more efficiently. For those who love lilies, all these mean even more exciting varieties and prospects.

 

Feature image by @dejongleliesholland. Header image by @royalvanzanten_flowerbulbs.

FAQ

How long does it take to breed a new lily variety?

From the initial cross to a commercially available named variety, the process typically takes between 8 and 15 years. This includes time for seedling selection, stability trials, bulb multiplication, and evaluation by growers and florists. Some varieties, like the Roselily series, took nearly a decade from discovery to market launch simply because the breeders wanted to be certain of the flower's quality and consistency before releasing it.

What is the difference between an Asiatic, Oriental, and OT lily?

Asiatic lilies are the most common and come in a wide range of colors, but they are generally unscented. Oriental lilies are known for their large flowers and strong fragrance. OT hybrids (Oriental x Trumpet) combine the fragrance and petal size of Orientals with the tall stems and heat tolerance of Trumpet lilies. LA hybrids (Longiflorum x Asiatic) are popular with florists for their elegant shape and reliable performance.

Why are some lilies pollen-free?

Pollen-free lilies are bred to have their stamens converted into additional petals, a trait found in double-flowered varieties like the Roselily series from De Looff Lily Innovation. This mutation means the flower produces no loose pollen, which is a significant advantage because lily pollen can leave stubborn orange stains on clothing, upholstery, and surfaces. Pollen-free varieties are increasingly popular with florists and consumers for this reason.

What is embryo rescue and why is it necessary in lily breeding?

When lily species from different genetic groups are crossed, the resulting embryos often begin to develop but then abort before the seed matures, because the nutritional tissue surrounding them (the endosperm) fails to develop properly. Embryo rescue involves removing these fragile embryos early and placing them on a sterile nutrient medium in a laboratory, where they can complete their development under controlled conditions. Without this technique, most of today's intersectional hybrids like OT or LA lilies would never have been possible.

Can home gardeners hybridize their own lilies?

Yes, and the process is genuinely accessible. The North American Lily Society encourages hobbyist breeders to collect pollen from an unopened anther, dry it for a few days, then apply it generously to the stigma of the chosen seed parent. The excitement of growing your own first seedling to flower is something many lily enthusiasts describe as genuinely addictive. The results cannot be predicted in advance, which is a large part of the fun. Commercial breeders simply apply the same principle at a much larger scale and with far more rigorous selection criteria.

How are new lily varieties named?

Breeders or their marketing partners assign variety names, which are then registered with the Royal General Bulb Growers' Association (KAVB) in the Netherlands. Names can be almost anything, from place names and personal names to invented words, as long as they are not already in use. Once registered, the name is protected under plant breeders' rights, which give the originating, company exclusive commercial rights to propagate and sell that variety for a defined period.

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